How to run fastqc analysis in the computational infrastructure of INAB
Steps to run the analysis
1. Log in to the appropriate server:
o 160.40.71.4
2. Identify where your NGS results (.fastq files) are located:
o e.g., /mnt/new_home/stamatopoulos_research/2025_05_21_ERIC_study
3. Move to the precmed working directory:
cd /work/precmed/varCall/4. Create a new analysis directory:
mkdir run-2025-05-22-fastqc5. Run the fastqc:
You have to update with the right path your fastq files.
fastqc /mnt/new_home/stamatopoulos_research/2025_05_21_ERIC_study/*.fastq.gz -o run-2025-05-22-fastqc/